... | @@ -12,23 +12,22 @@ To set another location for installing packages , for example ```c:\R_libs``` u |
... | @@ -12,23 +12,22 @@ To set another location for installing packages , for example ```c:\R_libs``` u |
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```
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```
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To run our interactive interface, the OpenCPU R-package must be installed. To this end run the following command in R or RStudio.
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To run our interactive interface, the OpenCPU R-package must be installed. To this end run the following command in R or RStudio.
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**N.B.** the ">" symbol indicates the command prompt and should not be typed.
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```
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```
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# Bioconductor is required for the preprocessing of the fasta files
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# Bioconductor is required for the preprocessing of the fasta files
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source("http://bioconductor.org/biocLite.R")
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source("http://bioconductor.org/biocLite.R")
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> biocLite("Biostrings")
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biocLite("Biostrings")
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# OpenCPU is required to run the interactive binning tool
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# OpenCPU is required to run the interactive binning tool
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> install.packages("opencpu")
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install.packages("opencpu")
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# The packages FactoMiner and Hmisc should be preinstalled
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# The packages FactoMiner and Hmisc should be preinstalled
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>install.packages("FactoMineR")
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install.packages("FactoMineR")
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>install.packages("Hmisc")
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install.packages("Hmisc")
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# devtools is required to install the interactive binning tool
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# devtools is required to install the interactive binning tool
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> install.packages("devtools")
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install.packages("devtools")
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```
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```
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To get started with the guide you will have to download our prepared package or clone the github repository. In the remainder of this guide we will assume that the package is extracted in your home directory: ` ~/ICoVeR/`.
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To get started with the guide you will have to download our prepared package or clone the github repository. In the remainder of this guide we will assume that the package is extracted in your home directory: ` ~/ICoVeR/`.
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