- 17 Dec, 2015 1 commit
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Klaas Winter authored
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- 08 Dec, 2015 1 commit
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Klaas Winter authored
PCA support is added. This means that support is now available for showing both PCA and CA next to each other. When filtering is applied, both PCA and CA are updated, but on the variables that were used to initialise them. To achieve this, the DimRedPlot service is now responsible for performing PCA and CA, such that it also knows which analyses have been performed. The effect of this change is also that some of the logic from plotctrl has been moved into the DimRedPlot service, which is good since controllers shouldn't have too much logic anyways.
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- 03 Dec, 2015 5 commits
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Klaas Winter authored
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Klaas Winter authored
The reason for the problem was that minifying removes value-less tags. Such tags are however used by ui-bootstrap to create dropdown menus. Fixed by giving the tags a problem.
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Klaas Winter authored
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Klaas Winter authored
The label says: "x+y contribution"
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Klaas Winter authored
In the clustering menu, an switch has been added with which this behaviour can be switched. Closes #6.
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- 19 Nov, 2015 1 commit
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Bertjan Broeksema authored
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- 17 Nov, 2015 1 commit
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Klaas Winter authored
Currently data is not standardised before k-means is applied. This can have adverse effects when the variables clustered on do not have the same scale. Standardisation should fix this.
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- 16 Nov, 2015 2 commits
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Bertjan Broeksema authored
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Klaas Winter authored
The CSTR database had the following value in variable M36 at position 248: 1,006.10. Apparantly R does not support this notation and converted the M36 variable to a factor variable. I looked at the values of the 248th contig, and it really seems to be that the value is 1006.10 so I fixed this an turned M36 into a numeric variable. As far as I can tell, this particular instance is the only case where a value gets higher than 1000.
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- 13 Nov, 2015 10 commits
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Bertjan Broeksema authored
We have now all the files to prepare the wrighton dataset, as well as the script to perform the preparation and to start the application. This should users give a good deal of information to prepare their own datasets.
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
This makes it a bit more clear to the user where we are in the preparation process. It takes a bit of time, so giving an update every now and then gives at least a hint of progress being made.
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Bertjan Broeksema authored
It's unlikely that we'll use fasta anytime soon in the tool. So, let's just remove these comments for now.
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
We'll only provide the processed files for cstr.
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Bertjan Broeksema authored
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- 12 Nov, 2015 2 commits
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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- 11 Nov, 2015 1 commit
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Bertjan Broeksema authored
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- 10 Nov, 2015 1 commit
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Bertjan Broeksema authored
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- 06 Nov, 2015 2 commits
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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- 05 Nov, 2015 2 commits
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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- 04 Nov, 2015 11 commits
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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Bertjan Broeksema authored
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