improving indirect maintenance dataset

6ffa6d24 · Silvio Domingos CARDOSO · b898768d · 6ffa6d24 · b898768d · 6ffa6d24
Commit 6ffa6d24 authored Jan 10, 2019 by Silvio Domingos CARDOSO
8 changed files
--- a/Indirect Maintenance/README.md
+++ b/Indirect Maintenance/README.md
 # How to use?

-Case you want to evaluate a query in year 2016, you have to use the indexList_2014 and vice versa.
+Example:

-Combinations:
-### query_2014, indexlist 2016, gold standard 2014
-### query_2016, indexlist 2014, gold standard 2016
+term;concept;yearKG;yearIndex;reference
+Dental Implantation;D003757;2016;2014;23

-*** The indexList, means the metadata associated to the document ***
+Starting point in the KG 2016, stop point 2014
+Use the index list from 2014.

+
+## Index List
+
+concept;document;year
+D001810;4;2014_2016  => Index valid in both years
+
+D008459;26;2014 => Index valid only in 2014
+
+D007030;27;2016 => Index valid only in 2016
\ No newline at end of file
--- a/Indirect Maintenance/goldStandard.csv
+++ b/Indirect Maintenance/goldStandard.csv
-term;concept;year;reference
-Sleep Disorders;D012893;2014;23
-Sleep Disorders;D012893;2014;5
-Sleep Disorders;D012893;2014;17
-Missions and Missionaries;D008921;2014;13
-Newspapers;D009524;2014;4
-Arachis;D010367;2016;27
-Secale cereale;D012434;2014;21
-Avian Leukosis Virus;D001354;2016;22
-Neurocognitive Disorders;D019965;2016;23
-Neurocognitive Disorders;D019965;2016;24
-Neurocognitive Disorders;D019965;2016;2
-Neurocognitive Disorders;D019965;2016;26
-World Health;D014943;2014;23
-World Health;D014943;2014;27
-Global Health;D014943;2016;23
-Global Health;D014943;2016;27
-Psoralens;D011564;2014;3
-Psoralens;D011564;2014;30
-Roma;D006178;2016;14
-In Vitro Techniques;D066298;2016;22
-In Vitro Techniques;D066298;2016;23
-In Vitro Techniques;D066298;2016;24
-In Vitro Techniques;D066298;2016;25
-In Vitro Techniques;D066298;2016;26
-In Vitro Techniques;D066298;2016;27
-In Vitro Techniques;D066298;2016;28
-In Vitro Techniques;D066298;2016;29
-In Vitro Techniques;D066298;2016;30
-In Vitro Techniques;D066298;2016;10
-In Vitro Techniques;D066298;2016;11
-In Vitro Techniques;D066298;2016;12
-In Vitro Techniques;D066298;2016;13
-In Vitro Techniques;D066298;2016;14
-In Vitro Techniques;D066298;2016;15
-In Vitro Techniques;D066298;2016;16
-In Vitro Techniques;D066298;2016;17
-In Vitro Techniques;D066298;2016;18
-In Vitro Techniques;D066298;2016;19
-In Vitro Techniques;D066298;2016;1
-In Vitro Techniques;D066298;2016;2
-In Vitro Techniques;D066298;2016;3
-In Vitro Techniques;D066298;2016;5
-In Vitro Techniques;D066298;2016;6
-In Vitro Techniques;D066298;2016;7
-In Vitro Techniques;D066298;2016;8
-In Vitro Techniques;D066298;2016;9
-In Vitro Techniques;D066298;2016;20
-In Vitro Techniques;D066298;2016;21
-Warfare;D014857;2016;27
-Warfare;D014857;2016;7
-Warfare;D014857;2016;20
-Newspapers as Topic;D009524;2016;4
-Consumer Behavior;D003258;2016;27
-Consumer Behavior;D003258;2016;6
-Eating Disorders;D001068;2014;24
-Furocoumarins;D011564;2016;3
-Furocoumarins;D011564;2016;30
-Practice Patterns, Physicians';D010818;2016;5
-Practice Patterns, Physicians';D010818;2016;29
-Arachis hypogaea;D010367;2014;27
-Gypsies;D006178;2014;14
-War;D014857;2014;27
-War;D014857;2014;7
-War;D014857;2014;20
-Wegener Granulomatosis;D014890;2014;11
-Wegener Granulomatosis;D014890;2014;20
-Avian leukosis virus;D001354;2014;22
-Tumor Markers, Biological;D014408;2014;23
-Tumor Markers, Biological;D014408;2014;13
-Tumor Markers, Biological;D014408;2014;26
-Tumor Markers, Biological;D014408;2014;17
-Tumor Markers, Biological;D014408;2014;6
-Tumor Markers, Biological;D014408;2014;8
-Tumor Markers, Biological;D014408;2014;21
-Psychology, Child;D002666;2016;15
-Psychology, Child;D002666;2016;20
-Trimethoprim, Sulfamethoxazole Drug Combination;D015662;2016;20
-Child Psychology;D002666;2014;15
-Child Psychology;D002666;2014;20
-Diet, Diabetic;D003927;2016;5
-Cytochrome P-450 CYP2C9;D065729;2016;14
-Sleep Wake Disorders;D012893;2016;23
-Sleep Wake Disorders;D012893;2016;5
-Sleep Wake Disorders;D012893;2016;17
-beta-Lactamases;D001618;2014;26
-Cytochrome P-450 CYP2C8;D065727;2016;14
-Trimethoprim-Sulfamethoxazole Combination;D015662;2014;20
-Cytochrome P-450 Enzyme System;D003577;2014;27
-Cytochrome P-450 Enzyme System;D003577;2014;21
-Delirium, Dementia, Amnestic, Cognitive Disorders;D019965;2014;23
-Delirium, Dementia, Amnestic, Cognitive Disorders;D019965;2014;24
-Delirium, Dementia, Amnestic, Cognitive Disorders;D019965;2014;2
-Delirium, Dementia, Amnestic, Cognitive Disorders;D019965;2014;26
-Metabolic Detoxication, Drug;D008658;2014;1
-Metabolic Detoxication, Drug;D008658;2014;27
-Edible Grain;D002523;2016;12
-Edible Grain;D002523;2016;2
-Edible Grain;D002523;2016;21
-Adenylate Cyclase;D000262;2014;22
-Adenylate Cyclase;D000262;2014;23
-Adenylate Cyclase;D000262;2014;2
-Adenylate Cyclase;D000262;2014;27
-Adenylate Cyclase;D000262;2014;28
-Adenylate Cyclase;D000262;2014;18
-Adenylate Cyclase;D000262;2014;9
-Adenylate Cyclase;D000262;2014;20
-Diabetic Diet;D003927;2014;5
-Religious Missions;D008921;2016;13
-Startle Reaction;D013216;2014;21
-Secale;D012434;2016;21
-Biological Markers;D015415;2014;1
-Biological Markers;D015415;2014;15
-Biological Markers;D015415;2014;27
-Biological Markers;D015415;2014;6
-Biological Markers;D015415;2014;7
-Biological Markers;D015415;2014;8
-Granulomatosis with Polyangiitis;D014890;2016;11
-Granulomatosis with Polyangiitis;D014890;2016;20
-Inactivation, Metabolic;D008658;2016;1
-Inactivation, Metabolic;D008658;2016;27
-Biomarkers;D015415;2016;1
-Biomarkers;D015415;2016;15
-Biomarkers;D015415;2016;27
-Biomarkers;D015415;2016;6
-Biomarkers;D015415;2016;7
-Biomarkers;D015415;2016;8
-Adenylyl Cyclases;D000262;2016;22
-Adenylyl Cyclases;D000262;2016;23
-Adenylyl Cyclases;D000262;2016;2
-Adenylyl Cyclases;D000262;2016;27
-Adenylyl Cyclases;D000262;2016;28
-Adenylyl Cyclases;D000262;2016;18
-Adenylyl Cyclases;D000262;2016;9
-Adenylyl Cyclases;D000262;2016;20
-Serine-Arginine Splicing Factors;D000068103;2016;6
-Day Care, Medical;D003631;2016;23
-Questionnaires;D011795;2014;12
-Questionnaires;D011795;2014;13
-Questionnaires;D011795;2014;2
-Questionnaires;D011795;2014;3
-Questionnaires;D011795;2014;4
-Questionnaires;D011795;2014;27
-Questionnaires;D011795;2014;5
-Questionnaires;D011795;2014;6
-Questionnaires;D011795;2014;8
-Questionnaires;D011795;2014;20
-Questionnaires;D011795;2014;10
-Cereals;D002523;2014;12
-Cereals;D002523;2014;2
-Cereals;D002523;2014;21
-Ornithine Decarboxylase Inhibitors;D065108;2016;2
-Ornithine Decarboxylase Inhibitors;D065108;2016;27
-Rifabutin;D017828;2016;23
-Feeding and Eating Disorders;D001068;2016;24
-Physician's Practice Patterns;D010818;2014;5
-Physician's Practice Patterns;D010818;2014;29
-beta-Lactamase Inhibitors;D065093;2016;26
-Surveys and Questionnaires;D011795;2016;12
-Surveys and Questionnaires;D011795;2016;13
-Surveys and Questionnaires;D011795;2016;2
-Surveys and Questionnaires;D011795;2016;3
-Surveys and Questionnaires;D011795;2016;4
-Surveys and Questionnaires;D011795;2016;27
-Surveys and Questionnaires;D011795;2016;5
-Surveys and Questionnaires;D011795;2016;6
-Surveys and Questionnaires;D011795;2016;8
-Surveys and Questionnaires;D011795;2016;20
-Surveys and Questionnaires;D011795;2016;10
-DNA-Directed DNA Polymerase;D004259;2014;3
-Day Care;D003631;2014;23
-Reflex, Startle;D013216;2016;21
-Consumer Satisfaction;D003258;2014;27
-Consumer Satisfaction;D003258;2014;6
-Cytochrome P-450 Enzyme Inhibitors;D065607;2016;27
-Cytochrome P-450 Enzyme Inhibitors;D065607;2016;21
-Nucleic Acid Synthesis Inhibitors;D019384;2016;3
-Missionaries;D066189;2016;13
-Ornithine Decarboxylase;D009955;2014;2
-Ornithine Decarboxylase;D009955;2014;27
-Biomarkers, Tumor;D014408;2016;23
-Biomarkers, Tumor;D014408;2016;13
-Biomarkers, Tumor;D014408;2016;26
-Biomarkers, Tumor;D014408;2016;17
-Biomarkers, Tumor;D014408;2016;6
-Biomarkers, Tumor;D014408;2016;8
-Biomarkers, Tumor;D014408;2016;21
--- a/Indirect Maintenance/goldStandard.txt
+++ b/Indirect Maintenance/goldStandard.txt
--- a/Indirect Maintenance/indexList.csv
+++ b/Indirect Maintenance/indexList.csv
--- a/Indirect Maintenance/indexList_2014.csv
+++ b/Indirect Maintenance/indexList_2014.csv
--- a/Indirect Maintenance/indexList_2016.csv
+++ b/Indirect Maintenance/indexList_2016.csv
--- a/Indirect Maintenance/qrels2014.txt
+++ b/Indirect Maintenance/qrels2014.txt
--- a/Indirect Maintenance/queries.csv
+++ b/Indirect Maintenance/queries.csv
-term;concept;year
-Sleep Disorders;D012893;2014
-Missions and Missionaries;D008921;2014
-Newspapers;D009524;2014
-Secale cereale;D012434;2014
-World Health;D014943;2014
-Psoralens;D011564;2014
-Eating Disorders;D001068;2014
-Arachis hypogaea;D010367;2014
-Gypsies;D006178;2014
-War;D014857;2014
-Wegener Granulomatosis;D014890;2014
-Avian leukosis virus;D001354;2014
-Tumor Markers, Biological;D014408;2014
-Child Psychology;D002666;2014
-beta-Lactamases;D001618;2014
-Trimethoprim-Sulfamethoxazole Combination;D015662;2014
-Cytochrome P-450 Enzyme System;D003577;2014
-Delirium, Dementia, Amnestic, Cognitive Disorders;D019965;2014
-Metabolic Detoxication, Drug;D008658;2014
-Adenylate Cyclase;D000262;2014
-Diabetic Diet;D003927;2014
-Startle Reaction;D013216;2014
-Biological Markers;D015415;2014
-Questionnaires;D011795;2014
-Cereals;D002523;2014
-Physician's Practice Patterns;D010818;2014
-DNA-Directed DNA Polymerase;D004259;2014
-Day Care;D003631;2014
-Consumer Satisfaction;D003258;2014
-Ornithine Decarboxylase;D009955;2014
-Arachis;D010367;2016
-Avian Leukosis Virus;D001354;2016
-Neurocognitive Disorders;D019965;2016
-Global Health;D014943;2016
-Roma;D006178;2016
-In Vitro Techniques;D066298;2016
-Warfare;D014857;2016
-Newspapers as Topic;D009524;2016
-Consumer Behavior;D003258;2016
-Furocoumarins;D011564;2016
-Practice Patterns, Physicians';D010818;2016
-Psychology, Child;D002666;2016
-Trimethoprim, Sulfamethoxazole Drug Combination;D015662;2016
-Diet, Diabetic;D003927;2016
-Cytochrome P-450 CYP2C9;D065729;2016
-Sleep Wake Disorders;D012893;2016
-Cytochrome P-450 CYP2C8;D065727;2016
-Edible Grain;D002523;2016
-Religious Missions;D008921;2016
-Secale;D012434;2016
-Granulomatosis with Polyangiitis;D014890;2016
-Inactivation, Metabolic;D008658;2016
-Biomarkers;D015415;2016
-Adenylyl Cyclases;D000262;2016
-Serine-Arginine Splicing Factors;D000068103;2016
-Day Care, Medical;D003631;2016
-Ornithine Decarboxylase Inhibitors;D065108;2016
-Rifabutin;D017828;2016
-Feeding and Eating Disorders;D001068;2016
-beta-Lactamase Inhibitors;D065093;2016
-Surveys and Questionnaires;D011795;2016
-Reflex, Startle;D013216;2016
-Cytochrome P-450 Enzyme Inhibitors;D065607;2016
-Nucleic Acid Synthesis Inhibitors;D019384;2016
-Missionaries;D066189;2016
-Biomarkers, Tumor;D014408;2016
\ No newline at end of file